http://purl.org/np/RAnDa0kiub0RAQzloA6g-Cg70ZP5rn-aPSc2jxd3dfNq0
.trig | .trig.txt | .jelly | .jelly.txt
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix this: <http://purl.org/np/RAnDa0kiub0RAQzloA6g-Cg70ZP5rn-aPSc2jxd3dfNq0> .
@prefix sub: <http://purl.org/np/RAnDa0kiub0RAQzloA6g-Cg70ZP5rn-aPSc2jxd3dfNq0#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix orcid: <https://orcid.org/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix sepio: <http://purl.obolibrary.org/obo/SEPIO_> .
@prefix eco: <http://purl.obolibrary.org/obo/ECO_> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
eco:0000006 rdfs:label "experimental evidence" .
eco:0000180 rdfs:label "clinical study evidence" .
eco:0000204 rdfs:label "author statement" .
eco:0000205 rdfs:label "curator inference" .
eco:0000362 rdfs:label "computational inference" .
eco:0005548 rdfs:label "biological system reconstruction evidence based on inference from background scientific knowledge" .
eco:0006152 rdfs:label "medical practitioner statement evidence" .
eco:0006153 rdfs:label "self-reported individual's statement evidence" .
eco:0007672 rdfs:label "computational evidence" .
sepio:0000145 rdfs:label "has evidence from source" .
sepio:0000398 rdfs:label "has evidence type (ECO code)" .
sub:assertion a nt:AssertionTemplate;
rdfs:label "Adding evidences to a biomedical association";
nt:hasStatement sub:st0, sub:st1, sub:st10, sub:st2, sub:st3, sub:st4, sub:st5, sub:st6,
sub:st7, sub:st8, sub:st9 .
sub:association a nt:LocalResource;
rdfs:label "This association" .
sub:evidence a nt:LocalResource;
rdfs:label "This evidence" .
sub:evidencedescription a nt:LiteralPlaceholder;
rdfs:label "provide a human-readable description of the evidence here, and how it supports or negates the association" .
sub:evidencetype a nt:GuidedChoicePlaceholder;
rdfs:label "add the evidence code from the evidence code ontology here";
nt:possibleValue eco:0000000, eco:0000006, eco:0000180, eco:0000204, eco:0000205,
eco:0000362, eco:0005548, eco:0006152, eco:0006153, eco:0007672;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=ECO&q=" .
sub:evidenceuri a nt:UriPlaceholder;
rdfs:label "add the URL to the source of the evidence here (e.g. DailyMed publication)" .
sub:negated a nt:RestrictedChoicePlaceholder;
nt:possibleValue "false", "true" .
sub:object a nt:UriPlaceholder;
rdfs:label "add the object URI here" .
sub:relation a nt:GuidedChoicePlaceholder;
rdfs:label "add the BioLink relation here";
nt:possibleValue biolink:affects, biolink:correlated_with, biolink:interacts_with;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:st0 a rdf:Statement;
rdf:object biolink:Association;
rdf:predicate rdf:type;
rdf:subject sub:association;
nt:statementOrder "0"^^xsd:integer .
sub:st1 a rdf:Statement;
rdf:object sub:subject;
rdf:predicate biolink:subject;
rdf:subject sub:association;
nt:statementOrder "1"^^xsd:integer .
sub:st10 a rdf:Statement;
rdf:object sub:evidence;
rdf:predicate biolink:id;
rdf:subject sub:evidence;
nt:statementOrder "10"^^xsd:integer .
sub:st2 a rdf:Statement;
rdf:object sub:relation;
rdf:predicate biolink:relation;
rdf:subject sub:association;
nt:statementOrder "2"^^xsd:integer .
sub:st3 a rdf:Statement;
rdf:object sub:object;
rdf:predicate biolink:object;
rdf:subject sub:association;
nt:statementOrder "3"^^xsd:integer .
sub:st4 a rdf:Statement;
rdf:object sub:negated;
rdf:predicate biolink:negated;
rdf:subject sub:association;
nt:statementOrder "4"^^xsd:integer .
sub:st5 a rdf:Statement;
rdf:object sub:evidence;
rdf:predicate biolink:has_evidence;
rdf:subject sub:association;
nt:statementOrder "5"^^xsd:integer .
sub:st6 a rdf:Statement;
rdf:object sub:evidenceuri;
rdf:predicate sepio:0000145;
rdf:subject sub:evidence;
nt:statementOrder "6"^^xsd:integer .
sub:st7 a rdf:Statement;
rdf:object sub:evidencedescription;
rdf:predicate biolink:description;
rdf:subject sub:evidence;
nt:statementOrder "7"^^xsd:integer .
sub:st8 a rdf:Statement;
rdf:object biolink:EvidenceType;
rdf:predicate rdf:type;
rdf:subject sub:evidence;
nt:statementOrder "8"^^xsd:integer .
sub:st9 a rdf:OptionalStatement;
rdf:object sub:evidencetype;
rdf:predicate sepio:0000398;
rdf:subject sub:evidence;
nt:statementOrder "9"^^xsd:integer .
sub:subject a nt:UriPlaceholder;
rdfs:label "add the subject URI here" .
rdf:type rdfs:label "is a" .
prov:wasQuotedFrom rdfs:label "was quoted from" .
biolink:EvidenceType rdfs:label "Evidence" .
biolink:category rdfs:label "has type of evidence" .
biolink:description rdfs:label "is described by" .
biolink:has_evidence rdfs:label "has evidence" .
biolink:id rdfs:label "has id" .
biolink:negated rdfs:label "is negated" .
biolink:object rdfs:label "has object" .
biolink:relation rdfs:label "has relation" .
biolink:subject rdfs:label "has subject" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0003-4727-9435 .
}
sub:pubinfo {
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCR9fz0fKCdWOWC+pxhkQhEM/ppbdIYe5TLSdj+lJzSlv9mYBaPgrzVezSwwbmhlHBPDZa4/vHycU315BdmUGq+pXllp9+rWFfrb+kBJwhZjpG6BeyyXBsRFz4jmQVxl/ZYHilQTh/XalYzKkEAyTiEMPee4Kz61PaWOKH24CsnOQIDAQAB";
npx:hasSignature "JZlEfl5LHbvuAafSVMCWr/hkh5jnrfkOT94CBx8jkiBW+z1knlPzuTWgojXtDd3BGlJOKR05W0/xM9upII809ibH9Wgtqf3QPLwm+dakyafdgx2Z74SIKpGH6y/MEiGDZGYtivTu4Eiz3koR6Ke+gP5kzzv2dptpPxVWhMaE4VQ=";
npx:hasSignatureTarget this: .
this: dcterms:created "2020-08-23"^^xsd:date;
dcterms:creator orcid:0000-0003-4727-9435;
npx:supersedes <http://purl.org/np/RALHoHT9IowYzd70PoUx_izMLserXgm2y08vd0nnaXilI> .
}