Nanopublication

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ID

http://purl.org/np/RAl6ML-bkelnW2pIvy4r9ftFBOjtWUfCLQvQWG4UTukC4

Formats

.trig | .trig.txt | .jelly | .jelly.txt

Content

@prefix this: <http://purl.org/np/RAl6ML-bkelnW2pIvy4r9ftFBOjtWUfCLQvQWG4UTukC4> .
@prefix sub: <http://purl.org/np/RAl6ML-bkelnW2pIvy4r9ftFBOjtWUfCLQvQWG4UTukC4#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <http://purl.obolibrary.org/obo/RO_0001019> rdfs:label "contains" .
  
  sub:assertion a nt:AssertionTemplate;
    dct:description "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and a gene.";
    rdfs:label "Expressing an association between an organism taxon and a gene";
    nt:hasStatement sub:st0, sub:st1, sub:st2, sub:st3, sub:st4;
    nt:hasTag "Biodiversity" .
  
  sub:association a nt:IntroducedResource, nt:LocalResource;
    rdfs:label "this association" .
  
  sub:gene a nt:GuidedChoicePlaceholder;
    rdfs:label "the gene to be associated with the taxon";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ogg&fieldList=iri,label,description&q=" .
  
  sub:lifecyclestage a nt:GuidedChoicePlaceholder;
    rdfs:label "the life cycle stage";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&fieldList=iri,label,description&childrenOf=http://purl.obolibrary.org/obo/UBERON_0000105&q=" .
  
  sub:relation a nt:GuidedChoicePlaceholder;
    rdfs:label "the type of relation between the taxon and the gene";
    nt:possibleValue <http://purl.obolibrary.org/obo/RO_0001019>;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .
  
  sub:st0 rdf:object <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation>;
    rdf:predicate rdf:type;
    rdf:subject sub:association .
  
  sub:st1 rdf:object sub:taxon;
    rdf:predicate <https://w3id.org/biolink/vocab/subject>;
    rdf:subject sub:association .
  
  sub:st2 a nt:OptionalStatement;
    rdf:object sub:lifecyclestage;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage>;
    rdf:subject sub:association .
  
  sub:st3 rdf:object sub:relation;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
    rdf:subject sub:association .
  
  sub:st4 rdf:object sub:gene;
    rdf:predicate <https://w3id.org/biolink/vocab/object>;
    rdf:subject sub:association .
  
  sub:taxon a nt:GuidedChoicePlaceholder;
    rdfs:label "the organism taxon, e.g. a species";
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
  
  rdf:type rdfs:label "is a" .
  
  <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> rdfs:label
      "association of an organism taxon to an environment" .
  
  <https://w3id.org/biolink/vocab/object> rdfs:label "refers to the gene" .
  
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between taxon and gene)" .
  
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to the organism taxon" .
  
  <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage> rdfs:label "refers to the taxon's life cycle stage" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB";
    npx:hasSignature "S90R8pC7Dr2Wq0JWbUndte2gy17egnk33Ywo82GqQEOps/UUE6TVzDNzbXxxLdIlijLN48KlRtmgKyngcq+Nj1Ue46wMlGOzdOhDiVV/0ftwmxEvwuDyTTVI/vsRxzScopbwJ3t8Pi49x6ecJsNBt5/aGTQov8q58zPcnMsanbU=";
    npx:hasSignatureTarget this: .
  
  this: dct:created "2023-05-16T13:26:56.556Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234;
    nt:wasCreatedFromProvenanceTemplate <http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM>;
    nt:wasCreatedFromPubinfoTemplate <http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM>;
    nt:wasCreatedFromTemplate <http://purl.org/np/RAkONP_jLqAbok3FgtutnKcLs4IHr9KiAuslQNnfEJIwY> .
}