http://purl.org/np/RA_tANaWEZaJioW8eHiD9on76KZpodJz03ZSohsblnxv4
.trig | .trig.txt | .jelly | .jelly.txt
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix this: <http://purl.org/np/RA_tANaWEZaJioW8eHiD9on76KZpodJz03ZSohsblnxv4> .
@prefix sub: <http://purl.org/np/RA_tANaWEZaJioW8eHiD9on76KZpodJz03ZSohsblnxv4#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix orcid: <https://orcid.org/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix sepio: <http://purl.obolibrary.org/obo/SEPIO_> .
@prefix evi: <https://w3id.org/EVI#> .
@prefix dao: <https://w3id.org/dao/dao#> .
@prefix eco: <http://purl.obolibrary.org/obo/ECO_> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
eco:0000006 rdfs:label "experimental evidence" .
eco:0000180 rdfs:label "clinical study evidence" .
eco:0000204 rdfs:label "author statement" .
eco:0000205 rdfs:label "curator inference" .
eco:0000362 rdfs:label "computational inference" .
eco:0005548 rdfs:label "biological system reconstruction evidence based on inference from background scientific knowledge" .
eco:0006152 rdfs:label "medical practitioner statement evidence" .
eco:0006153 rdfs:label "self-reported individual's statement evidence" .
eco:0007672 rdfs:label "computational evidence" .
sepio:0000145 rdfs:label "was quoted from" .
sepio:0000398 rdfs:label "has evidence type (ECO code)" .
sub:assertion a nt:AssertionTemplate;
rdfs:label "Adding evidences to an association";
nt:hasStatement sub:st00, sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06 .
sub:confidencescore a nt:LiteralPlaceholder;
rdfs:label "add the level of confidence in the evidence from 0 to 1, e.g. 0.5" .
sub:evidence a nt:LocalResource;
rdfs:label "This evidence" .
sub:evidencedescription a nt:LiteralPlaceholder;
rdfs:label "provide a human-readable description of the evidence here, and how it supports or challenges the association" .
sub:evidencerelation a nt:GuidedChoicePlaceholder;
rdfs:label "define the evidence relation";
nt:possibleValue evi:challengedBy, evi:indirectlyChallengedBy, evi:indirectlySupportedBy,
evi:supportedBy, biolink:has_evidence;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&include_properties=true&ontologies=EVI&q=" .
sub:evidencetype a nt:GuidedChoicePlaceholder;
rdfs:label "add the evidence code from the evidence code ontology here";
nt:possibleValue eco:0000000, eco:0000006, eco:0000180, eco:0000204, eco:0000205,
eco:0000362, eco:0005548, eco:0006152, eco:0006153, eco:0007672;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=ECO&q=" .
sub:evidenceuri a nt:UriPlaceholder;
rdfs:label "add the URL to the source of the evidence here (e.g. DailyMed publication)" .
sub:st00 a rdf:Statement;
rdf:object sub:evidence;
rdf:predicate sub:evidencerelation;
rdf:subject sub:thing;
nt:statementOrder "0"^^xsd:integer .
sub:st01 a rdf:Statement;
rdf:object sub:evidenceuri;
rdf:predicate sepio:0000145;
rdf:subject sub:evidence;
nt:statementOrder "1"^^xsd:integer .
sub:st02 a rdf:Statement;
rdf:object sub:evidencedescription;
rdf:predicate biolink:description;
rdf:subject sub:evidence;
nt:statementOrder "2"^^xsd:integer .
sub:st03 a nt:OptionalStatement;
rdf:object sub:confidencescore;
rdf:predicate biolink:has_confidence_level;
rdf:subject sub:evidence;
nt:statementOrder "6"^^xsd:integer .
sub:st04 a nt:OptionalStatement;
rdf:object sub:evidencetype;
rdf:predicate sepio:0000398;
rdf:subject sub:evidence;
nt:statementOrder "3"^^xsd:integer .
sub:st05 a rdf:Statement;
rdf:object sub:evidence;
rdf:predicate biolink:id;
rdf:subject sub:evidence;
nt:statementOrder "4"^^xsd:integer .
sub:st06 a rdf:Statement;
rdf:object biolink:EvidenceType;
rdf:predicate rdf:type;
rdf:subject sub:evidence;
nt:statementOrder "5"^^xsd:integer .
sub:thing a nt:UriPlaceholder;
rdfs:label "The URI of the association you want to add an evidence to" .
rdf:type rdfs:label "is a" .
rdfs:label rdfs:label "asserts that" .
prov:wasQuotedFrom rdfs:label "was quoted from" .
biolink:EvidenceType rdfs:label "Evidence" .
biolink:category rdfs:label "has type of evidence" .
biolink:description rdfs:label "is described by" .
biolink:has_confidence_level rdfs:label "has a confidence level of" .
biolink:has_evidence rdfs:label "has evidence" .
biolink:id rdfs:label "has id" .
dao:context rdfs:label "has context" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0003-4727-9435 .
}
sub:pubinfo {
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCR9fz0fKCdWOWC+pxhkQhEM/ppbdIYe5TLSdj+lJzSlv9mYBaPgrzVezSwwbmhlHBPDZa4/vHycU315BdmUGq+pXllp9+rWFfrb+kBJwhZjpG6BeyyXBsRFz4jmQVxl/ZYHilQTh/XalYzKkEAyTiEMPee4Kz61PaWOKH24CsnOQIDAQAB";
npx:hasSignature "PaRRaitIl+36iTe+TebM4E85Y+FJ41q9MhVwEFUMfu4Cu25bE2YqA2yXG6wtzGlAcHbq/rx7SDcg7za8WtJia/UCLbJMHHD/S1k8nK0Fd5KqXsWGJ/zOgAo7aGrNxlgqW4/3nnjDBVWnTWPZBqRRzTgqk/mvNJ5UEC4U4n0yzN8=";
npx:hasSignatureTarget this: .
this: dcterms:created "2020-09-18T11:00:00+01:00"^^xsd:dateTime;
dcterms:creator orcid:0000-0003-4727-9435;
npx:supersedes <http://purl.org/np/RAFuSStyFTElQkUq9h7gkvEy4dvheo3KHup73-2YsF6e0> .
}