Nanopublication

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ID

https://w3id.org/np/RA_9D1Nq2swlXE3IuLnZtLIZVd85-FfbxNceiS-lLL7eQ

Formats

.trig | .trig.txt | .jelly | .jelly.txt

Content

@prefix this: <https://w3id.org/np/RA_9D1Nq2swlXE3IuLnZtLIZVd85-FfbxNceiS-lLL7eQ> .
@prefix sub: <https://w3id.org/np/RA_9D1Nq2swlXE3IuLnZtLIZVd85-FfbxNceiS-lLL7eQ#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix ns1: <http://purl.org/np/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <http://purl.obolibrary.org/obo/RO_0002175> rdfs:label "present in taxon" .
  
  rdf:type rdfs:label "is an" .
  
  <https://w3id.org/biolink/vocab/object> rdfs:label "refers to the taxon" .
  
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between chemical and taxon)" .
  
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to the chemical" .
  
  sub:assertion a nt:AssertionTemplate, nt:UnlistedTemplate;
    dct:description "Such a nanopublication expresses an association between a chemical and a taxon (e.g. a species).";
    rdfs:label "Expressing an association between a chemical and a taxon";
    nt:hasNanopubLabelPattern "${chemical} ${relation} ${taxon}";
    nt:hasStatement sub:st0, sub:st1, sub:st2, sub:st3;
    nt:hasTag "Biodiversity";
    nt:hasTargetNanopubType <https://w3id.org/kpxl/biodiv/terms/BiodivNanopub> .
  
  sub:association a nt:IntroducedResource, nt:LocalResource;
    rdfs:label "this association" .
  
  sub:chemical a nt:GuidedChoicePlaceholder;
    rdfs:label "the chemical to be associated with the taxon";
    nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
  
  sub:relation a nt:GuidedChoicePlaceholder;
    rdfs:label "the type of relation between the chemical and the taxon";
    nt:possibleValue <http://purl.obolibrary.org/obo/RO_0002175>;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .
  
  sub:st0 rdf:object <https://w3ihttps://w3id.org/kpxl/biodiv/terms/OrganismTaxonToChemicalAssociation>;
    rdf:predicate rdf:type;
    rdf:subject sub:association .
  
  sub:st1 rdf:object sub:chemical;
    rdf:predicate <https://w3id.org/biolink/vocab/subject>;
    rdf:subject sub:association .
  
  sub:st2 rdf:object sub:relation;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
    rdf:subject sub:association .
  
  sub:st3 rdf:object sub:taxon;
    rdf:predicate <https://w3id.org/biolink/vocab/object>;
    rdf:subject sub:association .
  
  sub:taxon a nt:GuidedChoicePlaceholder;
    rdfs:label "the taxon, e.g. a species";
    nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
  
  <https://w3ihttps://w3id.org/kpxl/biodiv/terms/OrganismTaxonToChemicalAssociation>
    rdfs:label "chemical to taxon association" .
}

sub:provenance {
  sub:assertion prov:wasGeneratedBy sub:research-activity .
  
  sub:research-activity dct:description nt:ExternalUriPlaceholder .
  
  nt:ExternalUriPlaceholder a <http://purl.org/spar/fabio/ScholarlyWork> .
}

sub:pubinfo {
  orcid:0000-0003-3389-2191 foaf:name "Pierre-Marie Allard" .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCNgV7KvEdXGXu+GLDP17lXL3Q+td9uyXjqfZAi1hR4xtBNtwJXmL/n0ZkTm+oKGPM98tNuVSfOOTmCLYYYZy+tH/9VgKxy4UZMOpo6OzMVay7C5MxS80jxbAvapN3Df8WvBEXJRug8xsJ0vQkCjLq71Z26/B7DuJixF6G96lVDqwIDAQAB";
    npx:hasSignature "Wg7cZfHeq6gjZwsDZSmYbHTeyw/hQ1Det47IhhqecLspMUnKfssB6bRHbnlHLIbJ3AnPQLQzTIVDtv/fODabeXQE5fjRbpT6Y7N0eD4CAfb29agL7/SwBd6fP9t560mnbgnRDiUECgwuKJVLz0scAb1fRe8eEkeu8pndY/0X8b4=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0003-3389-2191 .
  
  this: dct:created "2024-02-07T17:39:14.229Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234, orcid:0000-0003-3389-2191;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:supersedes <https://w3id.org/np/RABTEyo9MqchL1TXRTnaND6ISSV-FDd5IY1Wl1g4E7BOw>;
    npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
    rdfs:label "Template: Expressing an association between a chemical and a taxon";
    prov:wasDerivedFrom <https://w3id.org/np/RAcFqwDaMqxdQjp-oROuWc17R07kgzuEsbrkuT2H1UcMY>,
      <https://w3id.org/np/RAxvh4t8yoViwe1P-Qbole8o-ZIlURCj7uvDND9mIBr6M>;
    nt:wasCreatedFromProvenanceTemplate ns1:RA_bMeVDu1KMzSAdjjedJfMFgcyGZ-G3FbELL6J1vFZ_o;
    nt:wasCreatedFromPubinfoTemplate ns1:RA2vCBXZf-icEcVRGhulJXugTGxpsV5yVr9yqCI1bQh4A,
      ns1:RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM, ns1:RABngHbKpoJ3U9Nebc8mX_KUdv_vXw28EejqAyQya5zVA,
      ns1:RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90, ns1:RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI;
    nt:wasCreatedFromTemplate ns1:RAJwu5sVubRqXY4t2gkSoGxWkMyZqnpkGTCPiTlmvi4so .
}