@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix this: <http://purl.org/np/RAYtFOO8lglc4TcoHQWeY6nDgkS8Irq2RVDH2rp4foNKw> .
@prefix sub: <http://purl.org/np/RAYtFOO8lglc4TcoHQWeY6nDgkS8Irq2RVDH2rp4foNKw#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix orcid: <https://orcid.org/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix sepio: <http://purl.obolibrary.org/obo/SEPIO_> .
@prefix dao: <https://w3id.org/dao/dao#> .
@prefix eco: <http://purl.obolibrary.org/obo/ECO_> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  eco:0000006 rdfs:label "experimental evidence" .
  
  eco:0000180 rdfs:label "clinical study evidence" .
  
  eco:0000204 rdfs:label "author statement" .
  
  eco:0000205 rdfs:label "curator inference" .
  
  eco:0000362 rdfs:label "computational inference" .
  
  eco:0005548 rdfs:label "biological system reconstruction evidence based on inference from background scientific knowledge" .
  
  eco:0006152 rdfs:label "medical practitioner statement evidence" .
  
  eco:0006153 rdfs:label "self-reported individual's statement evidence" .
  
  eco:0007672 rdfs:label "computational evidence" .
  
  sepio:0000145 rdfs:label "was quoted from" .
  
  sepio:0000398 rdfs:label "has evidence type (ECO code)" .
  
  sub:assertion a nt:AssertionTemplate;
    rdfs:label "Adding evidences to a biomedical association";
    nt:hasStatement sub:st00, sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06,
      sub:st07, sub:st08, sub:st09, sub:st10, sub:st11, sub:st12 .
  
  sub:association a nt:LocalResource;
    rdfs:label "This association" .
  
  sub:context a nt:LiteralPlaceholder;
    rdfs:label "describe in which context this assertion is true" .
  
  sub:evidence a nt:LocalResource;
    rdfs:label "This evidence" .
  
  sub:evidencedescription a nt:LiteralPlaceholder;
    rdfs:label "provide a human-readable description of the evidence here, and how it supports or disputes the association" .
  
  sub:evidencetype a nt:GuidedChoicePlaceholder;
    rdfs:label "add the evidence code from the evidence code ontology here";
    nt:possibleValue eco:0000000, eco:0000006, eco:0000180, eco:0000204, eco:0000205,
      eco:0000362, eco:0005548, eco:0006152, eco:0006153, eco:0007672;
    nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=ECO&q=" .
  
  sub:evidenceuri a nt:UriPlaceholder;
    rdfs:label "add the URL to the source of the evidence here (e.g. DailyMed publication)" .
  
  sub:negated a nt:RestrictedChoicePlaceholder;
    nt:possibleValue biolink:false, biolink:true .
  
  sub:object a nt:GuidedChoicePlaceholder;
    rdfs:label "search the target biomedical entity";
    nt:possibleValuesFromApi "http://robokop.renci.org:2434/lookup?limit=10&string=" .
  
  sub:readableassertion a nt:LiteralPlaceholder;
    rdfs:label "describe the assertion concisely (e.g. tylenol treats pain in adults patients)" .
  
  sub:relation a nt:GuidedChoicePlaceholder;
    rdfs:label "search for the relation in the BioLink model";
    nt:possibleValue biolink:affects, biolink:correlated_with, biolink:interacts_with;
    nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
  
  sub:st00 a rdf:Statement;
    rdf:object biolink:Association;
    rdf:predicate rdf:type;
    rdf:subject sub:association;
    nt:statementOrder "0"^^xsd:integer .
  
  sub:st01 a rdf:Statement;
    rdf:object sub:readableassertion;
    rdf:predicate rdfs:label;
    rdf:subject sub:association;
    nt:statementOrder "1"^^xsd:integer .
  
  sub:st02 a rdf:Statement;
    rdf:object sub:subject;
    rdf:predicate biolink:subject;
    rdf:subject sub:association;
    nt:statementOrder "2"^^xsd:integer .
  
  sub:st03 a rdf:Statement;
    rdf:object sub:relation;
    rdf:predicate biolink:relation;
    rdf:subject sub:association;
    nt:statementOrder "3"^^xsd:integer .
  
  sub:st04 a rdf:Statement;
    rdf:object sub:object;
    rdf:predicate biolink:object;
    rdf:subject sub:association;
    nt:statementOrder "4"^^xsd:integer .
  
  sub:st05 a nt:OptionalStatement;
    rdf:object sub:context;
    rdf:predicate dao:context;
    rdf:subject sub:association;
    nt:statementOrder "5"^^xsd:integer .
  
  sub:st06 a nt:OptionalStatement;
    rdf:object sub:negated;
    rdf:predicate biolink:negated;
    rdf:subject sub:association;
    nt:statementOrder "6"^^xsd:integer .
  
  sub:st07 a rdf:Statement;
    rdf:object sub:evidence;
    rdf:predicate biolink:has_evidence;
    rdf:subject sub:association;
    nt:statementOrder "7"^^xsd:integer .
  
  sub:st08 a rdf:Statement;
    rdf:object sub:evidenceuri;
    rdf:predicate sepio:0000145;
    rdf:subject sub:evidence;
    nt:statementOrder "8"^^xsd:integer .
  
  sub:st09 a rdf:Statement;
    rdf:object sub:evidencedescription;
    rdf:predicate biolink:description;
    rdf:subject sub:evidence;
    nt:statementOrder "9"^^xsd:integer .
  
  sub:st10 a nt:OptionalStatement;
    rdf:object sub:evidencetype;
    rdf:predicate sepio:0000398;
    rdf:subject sub:evidence;
    nt:statementOrder "10"^^xsd:integer .
  
  sub:st11 a rdf:Statement;
    rdf:object sub:evidence;
    rdf:predicate biolink:id;
    rdf:subject sub:evidence;
    nt:statementOrder "11"^^xsd:integer .
  
  sub:st12 a rdf:Statement;
    rdf:object biolink:EvidenceType;
    rdf:predicate rdf:type;
    rdf:subject sub:evidence;
    nt:statementOrder "12"^^xsd:integer .
  
  sub:subject a nt:GuidedChoicePlaceholder;
    rdfs:label "search the source biomedical entity";
    nt:possibleValuesFromApi "http://robokop.renci.org:2434/lookup?limit=10&string=" .
  
  rdf:type rdfs:label "is a" .
  
  rdfs:label rdfs:label "asserts that" .
  
  prov:wasQuotedFrom rdfs:label "was quoted from" .
  
  biolink:EvidenceType rdfs:label "Evidence" .
  
  biolink:category rdfs:label "has type of evidence" .
  
  biolink:description rdfs:label "is described by" .
  
  biolink:false rdfs:label "false" .
  
  biolink:has_evidence rdfs:label "has evidence" .
  
  biolink:id rdfs:label "has id" .
  
  biolink:negated rdfs:label "is negated" .
  
  biolink:object rdfs:label "has object" .
  
  biolink:relation rdfs:label "has relation" .
  
  biolink:subject rdfs:label "has subject" .
  
  biolink:true rdfs:label "true" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0003-4727-9435 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCR9fz0fKCdWOWC+pxhkQhEM/ppbdIYe5TLSdj+lJzSlv9mYBaPgrzVezSwwbmhlHBPDZa4/vHycU315BdmUGq+pXllp9+rWFfrb+kBJwhZjpG6BeyyXBsRFz4jmQVxl/ZYHilQTh/XalYzKkEAyTiEMPee4Kz61PaWOKH24CsnOQIDAQAB";
    npx:hasSignature "B7CSQstnm3WHPkK3yMIPVhy59QhgY9M1RbJQIdFR/TG3YWabjqRbArifEtuFipe5lj7+zKIIPbPik1RyBS1r0j3ePWA7DfeFQT4oc2CqgNiInpv9FXcLxq7STb/3ww+doGi5ip00HE03joL+EXXGOIFc2pgwdGaJmWqHRWDbBZA=";
    npx:hasSignatureTarget this: .
  
  this: dcterms:created "2020-09-07T10:00:00+01:00"^^xsd:dateTime;
    dcterms:creator orcid:0000-0003-4727-9435;
    npx:supersedes <http://purl.org/np/RARNEYJqqyF0pF4O3k-q2bhrzYN9-zHtpjTIaXmxgNieo> .
}