Nanopublication

< Home

ID

https://w3id.org/np/RAXwuoW8KqU4BzMWzh_0Hqwn_CQtZWgNu1he4nlq0NRWM

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAXwuoW8KqU4BzMWzh_0Hqwn_CQtZWgNu1he4nlq0NRWM> .
@prefix sub: <https://w3id.org/np/RAXwuoW8KqU4BzMWzh_0Hqwn_CQtZWgNu1he4nlq0NRWM#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix ns1: <http://purl.org/np/> .
@prefix prov: <http://www.w3.org/ns/prov#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <http://purl.obolibrary.org/obo/RO_0001019> rdfs:label "contains" .
  
  rdf:type rdfs:label "is a" .
  
  <https://w3id.org/biolink/vocab/object> rdfs:label "refers to the gene" .
  
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between taxon and gene)" .
  
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to the organism taxon" .
  
  <https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToGeneAssociation> rdfs:label "association of an organism taxon to a gene" .
  
  <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage> rdfs:label "refers to the taxon's life cycle stage" .
  
  sub:assertion a nt:AssertionTemplate;
    dct:description "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and a gene.";
    rdfs:label "Expressing an association between an organism taxon and a gene";
    nt:hasStatement sub:st0, sub:st1, sub:st2, sub:st3, sub:st4;
    nt:hasTag "Biodiversity" .
  
  sub:association a nt:IntroducedResource, nt:LocalResource;
    rdfs:label "this association" .
  
  sub:gene a nt:GuidedChoicePlaceholder;
    rdfs:label "the gene to be associated with the taxon";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ogg&fieldList=iri,label,description&q=" .
  
  sub:lifecyclestage a nt:GuidedChoicePlaceholder;
    rdfs:label "the life cycle stage";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&fieldList=iri,label,description&childrenOf=http://purl.obolibrary.org/obo/UBERON_0000105&q=" .
  
  sub:relation a nt:GuidedChoicePlaceholder;
    rdfs:label "the type of relation between the taxon and the gene";
    nt:possibleValue <http://purl.obolibrary.org/obo/RO_0001019>;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .
  
  sub:st0 rdf:object <https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToGeneAssociation>;
    rdf:predicate rdf:type;
    rdf:subject sub:association .
  
  sub:st1 rdf:object sub:taxon;
    rdf:predicate <https://w3id.org/biolink/vocab/subject>;
    rdf:subject sub:association .
  
  sub:st2 a nt:OptionalStatement;
    rdf:object sub:lifecyclestage;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage>;
    rdf:subject sub:association .
  
  sub:st3 rdf:object sub:relation;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
    rdf:subject sub:association .
  
  sub:st4 rdf:object sub:gene;
    rdf:predicate <https://w3id.org/biolink/vocab/object>;
    rdf:subject sub:association .
  
  sub:taxon a nt:GuidedChoicePlaceholder;
    rdfs:label "the organism taxon, e.g. a species";
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB";
    npx:hasSignature "jk6Ft1kA3od9BK34pjKyx8I6MzQdUpGWbi5AW+srO5xM5wnczNxEOhry1Nmo5E9nYeXgr6tnPMVs0b7Q3omH6SDeLUjdaRl0qVV8HW1Yj1xngx2rgs0mhX+y+u/r12HyW67s63/2widlefw+aXjFzz8Wck0n4vuAwz7kRG7gjgY=";
    npx:hasSignatureTarget this: .
  
  this: dct:created "2024-02-06T19:51:25.878Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:supersedes ns1:RAQcn-NHXcqWvEsguTCnFspUqCBBbzQis2KafZf3IDMpk;
    rdfs:label "Template: Expressing an association between an organism taxon and a gene";
    nt:wasCreatedFromProvenanceTemplate ns1:RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM;
    nt:wasCreatedFromPubinfoTemplate ns1:RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM,
      ns1:RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90, ns1:RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI;
    nt:wasCreatedFromTemplate ns1:RAJwu5sVubRqXY4t2gkSoGxWkMyZqnpkGTCPiTlmvi4so .
}