Nanopublication

ID

http://purl.org/np/RA4jgstrKZjsWlc7eEL0Dm_lbR6-UrdRjRMZRB0nlek6c
Formats

Content

@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix this: <http://purl.org/np/RA4jgstrKZjsWlc7eEL0Dm_lbR6-UrdRjRMZRB0nlek6c> .
@prefix sub: <http://purl.org/np/RA4jgstrKZjsWlc7eEL0Dm_lbR6-UrdRjRMZRB0nlek6c#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix orcid: <https://orcid.org/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix dao: <https://w3id.org/dao/dao#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:assertion a nt:AssertionTemplate;
    rdfs:label "Defining a biomedical association";
    nt:hasStatement sub:st00, sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06,
      sub:st07 .
  
  sub:association a nt:LocalResource;
    rdfs:label "This association" .
  
  sub:context a nt:LiteralPlaceholder;
    rdfs:label "describe in which context this assertion is true" .
  
  sub:object a nt:GuidedChoicePlaceholder;
    rdfs:label "target biomedical entity";
    nt:possibleValuesFromApi "http://robokop.renci.org:2434/lookup?limit=10&string=" .
  
  sub:objectType a nt:GuidedChoicePlaceholder;
    rdfs:label "search for the object class in the BioLink model";
    nt:possibleValue biolink:Disease, biolink:Drug, biolink:Gene, biolink:Protein;
    nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
  
  sub:readableassertion a nt:LiteralPlaceholder;
    rdfs:label "describe the assertion concisely (e.g. tylenol treats pain in adults patients)" .
  
  sub:relation a nt:GuidedChoicePlaceholder;
    rdfs:label "search for the relation in the BioLink model";
    nt:possibleValue biolink:affects, biolink:correlated_with, biolink:interacts_with,
      biolink:treated_by, biolink:treats;
    nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
  
  sub:st00 a rdf:Statement;
    rdf:object biolink:Association;
    rdf:predicate rdf:type;
    rdf:subject sub:association;
    nt:statementOrder "0"^^xsd:integer .
  
  sub:st01 a rdf:Statement;
    rdf:object sub:readableassertion;
    rdf:predicate rdfs:label;
    rdf:subject sub:association;
    nt:statementOrder "1"^^xsd:integer .
  
  sub:st02 a rdf:Statement;
    rdf:object sub:subject;
    rdf:predicate biolink:subject;
    rdf:subject sub:association;
    nt:statementOrder "2"^^xsd:integer .
  
  sub:st03 a rdf:Statement;
    rdf:object sub:subjectType;
    rdf:predicate rdf:type;
    rdf:subject sub:subject;
    nt:statementOrder "2"^^xsd:integer .
  
  sub:st04 a rdf:Statement;
    rdf:object sub:relation;
    rdf:predicate biolink:relation;
    rdf:subject sub:association;
    nt:statementOrder "3"^^xsd:integer .
  
  sub:st05 a rdf:Statement;
    rdf:object sub:object;
    rdf:predicate biolink:object;
    rdf:subject sub:association;
    nt:statementOrder "4"^^xsd:integer .
  
  sub:st06 a rdf:Statement;
    rdf:object sub:objectType;
    rdf:predicate rdf:type;
    rdf:subject sub:object;
    nt:statementOrder "2"^^xsd:integer .
  
  sub:st07 a nt:OptionalStatement;
    rdf:object sub:context;
    rdf:predicate dao:context;
    rdf:subject sub:association;
    nt:statementOrder "5"^^xsd:integer .
  
  sub:subject a nt:GuidedChoicePlaceholder;
    rdfs:label "source biomedical entity";
    nt:possibleValuesFromApi "http://robokop.renci.org:2434/lookup?limit=10&string=" .
  
  sub:subjectType a nt:GuidedChoicePlaceholder;
    rdfs:label "search for the subject class in the BioLink model";
    nt:possibleValue biolink:ChemicalSubstance, biolink:Disease, biolink:Drug, biolink:Gene,
      biolink:Protein;
    nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
  
  rdf:type rdfs:label "is a" .
  
  rdfs:label rdfs:label "asserts that" .
  
  biolink:description rdfs:label "is described by" .
  
  biolink:id rdfs:label "has id" .
  
  biolink:object rdfs:label "has object" .
  
  biolink:relation rdfs:label "has relation" .
  
  biolink:subject rdfs:label "has subject" .
  
  dao:context rdfs:label "has context" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0003-4727-9435 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCR9fz0fKCdWOWC+pxhkQhEM/ppbdIYe5TLSdj+lJzSlv9mYBaPgrzVezSwwbmhlHBPDZa4/vHycU315BdmUGq+pXllp9+rWFfrb+kBJwhZjpG6BeyyXBsRFz4jmQVxl/ZYHilQTh/XalYzKkEAyTiEMPee4Kz61PaWOKH24CsnOQIDAQAB";
    npx:hasSignature "DUpbfhDJL5grHCgccdR3vTQVecugdW20gvduwmlKqn7xLqAPTLbpd3bZSLCj8kBZ7DVdvBAdumWqnNR6Y6c4CsfyOPN7RZarbhdRsHn2z5XbmHLzXCv5WIRW+W1uib8L3pG4jmsbJIF8ppUpcuVu2syy9I2Gzjt1etUKaoWxrAs=";
    npx:hasSignatureTarget this: .
  
  this: dcterms:created "2020-11-18T10:00:00+01:00"^^xsd:dateTime;
    dcterms:creator orcid:0000-0003-4727-9435;
    npx:supersedes <http://purl.org/np/RAtXhAUQ6vdi1U171bl0vzKjlAiT41ju7qv_2eSMaguBo> .
}