http://purl.org/np/RA-k8dm_PFY50HzfUrl5p7kXbyGLCMWvfm0i_kpxYoZus
.trig | .trig.txt | .jelly | .jelly.txt
@prefix this: <http://purl.org/np/RA-k8dm_PFY50HzfUrl5p7kXbyGLCMWvfm0i_kpxYoZus> .
@prefix sub: <http://purl.org/np/RA-k8dm_PFY50HzfUrl5p7kXbyGLCMWvfm0i_kpxYoZus#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<http://purl.obolibrary.org/obo/RO_0002303> rdfs:label "has habitat" .
sub:assertion a nt:AssertionTemplate;
dct:description "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and an environment, for example expressing that the organisms of the given species inhabit the specified environment.";
rdfs:label "Expressing an association between an organism taxon and an environment";
nt:hasDefaultProvenance <http://purl.org/np/RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s>;
nt:hasNanopubLabelPattern "${taxonname} - ${relation} - ${environment}";
nt:hasStatement sub:st00, sub:st05, sub:st10, sub:st11, sub:st12, sub:st20, sub:st40,
sub:st60;
nt:hasTag "Biodiversity" .
sub:association a nt:IntroducedResource, nt:LocalResource;
rdfs:label "this association" .
sub:comment a nt:LongLiteralPlaceholder;
rdfs:label "short explanation related to the above statement" .
sub:environment a nt:GuidedChoicePlaceholder;
rdfs:label "the environment to be associated with the taxon";
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" .
sub:lifecyclestage a nt:RestrictedChoicePlaceholder;
rdfs:label "the life cycle stage";
nt:possibleValuesFrom <http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE> .
sub:relation a nt:GuidedChoicePlaceholder;
rdfs:label "the type of relation between the taxon and the environment";
nt:possibleValue <http://purl.obolibrary.org/obo/RO_0002303>;
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .
sub:st00 rdf:object <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation>;
rdf:predicate rdf:type;
rdf:subject sub:association .
sub:st05 rdf:object sub:relation;
rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
rdf:subject sub:association .
sub:st10 rdf:object sub:taxon;
rdf:predicate <https://w3id.org/biolink/vocab/subject>;
rdf:subject sub:association .
sub:st11 rdf:object sub:taxonname;
rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName>;
rdf:subject sub:taxon .
sub:st12 a nt:OptionalStatement;
rdf:object sub:taxondef;
rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition>;
rdf:subject sub:taxon .
sub:st20 a nt:OptionalStatement;
rdf:object sub:lifecyclestage;
rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage>;
rdf:subject sub:association .
sub:st40 rdf:object sub:environment;
rdf:predicate <https://w3id.org/biolink/vocab/object>;
rdf:subject sub:association .
sub:st60 a nt:OptionalStatement;
rdf:object sub:comment;
rdf:predicate rdfs:comment;
rdf:subject sub:association .
sub:taxon a nt:LocalResource;
rdfs:label "the taxon concept" .
sub:taxondef a nt:ExternalUriPlaceholder;
rdfs:label "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)";
nt:hasRegex "(https://doi.org/|https://treatment.plazi.org/id/).+" .
sub:taxonname a nt:GuidedChoicePlaceholder;
rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)";
nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
rdf:type rdfs:label "is a" .
rdfs:comment rdfs:label "has the free-text comment" .
<https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> rdfs:label
"association of an organism taxon to an environment" .
<https://w3id.org/biolink/vocab/object> rdfs:label "links the taxon to the environment" .
<https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between taxon and environment)" .
<https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .
<https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage> rdfs:label "refers to the taxon's life cycle stage" .
<https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> rdfs:label "is used as defined in" .
<https://w3id.org/kpxl/biodiv/terms/hasTaxonName> rdfs:label "has the name - links a taxon usage to a taxon name" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}
sub:pubinfo {
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB";
npx:hasSignature "PD1PiEP0C6g5kxNB7psvQpjA2ul9g+BhPzoOiTRt+4sssjHiX2ksirrKxJ5A3SU3H8ubIQUywOFqIc1vspxvT9y1pZ0aYS6ijdvUykti8EeawBRFFKGeRXdG0DwtF0m0BM8nAclO1vGkd5gqJ/NVjTo6BBCELptYz9RTZQg6aJ0=";
npx:hasSignatureTarget this: .
this: dct:created "2023-08-15T13:34:01.394Z"^^xsd:dateTime;
dct:creator orcid:0000-0002-1267-0234;
dct:license <https://creativecommons.org/licenses/by/4.0/>;
npx:supersedes <http://purl.org/np/RAhk0_ixQ5bwFarWdxjESZOoRyvNM2JUxRhqiMbUjt1RY>;
rdfs:label "Template: Expressing an association between an organism taxon and an environment";
nt:wasCreatedFromProvenanceTemplate <http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM>;
nt:wasCreatedFromPubinfoTemplate <http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM>,
<http://purl.org/np/RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90>, <http://purl.org/np/RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI>;
nt:wasCreatedFromTemplate <http://purl.org/np/RANjqEfLnGSzLuq0heRSXN0psYWW0oX4v3W8w7osb3xfs> .
}